At Wisemonk, we’ve supported numerous global employers in navigating India’s payroll landscape, balancing operational efficiency with stringent compliance. Below, we break down the payroll process and critical compliance risks, drawing from our hands-on experience managing multi-state workforces.
1. Payroll Processing in India: A Step-by-Step Overview
India’s payroll system involves three key stages, each requiring meticulous attention to local laws and employee entitlements.
Stage 1: Pre-Payroll Activities
- Policy Definition: Establish payroll policies covering pay cycles (monthly/bi-monthly), attendance rules, and leave encashment.
- Data Collection:
- Employee details: PAN, Aadhaar, bank accounts, and tax declarations.
- Attendance records via biometric systems or digital platforms.
- Input Validation: Verify data accuracy to prevent errors in salary calculations.
Example: A Mumbai-based IT firm uses Wisemonk’s digital platform to auto-capture attendance, reducing manual errors by 40%.
Stage 2: Payroll Calculation
- Gross Salary Calculation:
- Basic Salary: 40–50% of CTC (e.g., ₹50,000 from a ₹1,00,000 CTC).
- Allowances: HRA (₹20,000), conveyance (₹1,800/month), and special allowances.
- Statutory Deductions:
- EPF: 12% of Basic + DA from employer and employee (₹6,000 each for ₹50,000 Basic).
- ESI: 0.75% (employee) + 3.25% (employer) of wages ≤₹21,000/month.
- TDS: Calculated via income tax slabs (e.g., 5–30%).
- Net Pay:
Net Salary=Gross Salary−(EPF+ESI+Professional Tax+TDS)
Table 1: Sample Salary Breakdown
Stage 3: Post-Payroll Compliance
- Salary Disbursement: Transfer via bank mandates (NEFT/RTGS).
- Statutory Filings:
- EPF ECR: Filed by the 15th of each month.
- ESI Returns: Half-yearly filings (May 11/Nov 11).
- TDS Quarterly Returns: Form 24Q for salaried employees.
- Record Maintenance: Store payslips, attendance logs, and tax records for 3–7 years.
2. Key Compliance Risks for Global Employers
Risk 1: Misclassification of Employees
- Issue: Contractors vs. full-time staff under EPF/ESI thresholds.
- Penalty: EPFO fines up to ₹1 lakh + 12% interest on arrears.
Case Study: A Delhi-based startup misclassified 15 contractors as freelancers, incurring ₹8 lakh in EPF penalties.
Risk 2: Incorrect Statutory Calculations
- EPF Caps: Contributions now apply to actual salary (post-2024 reforms).
- ESI Thresholds: Maharashtra requires coverage for 20+ employees in hospitality; Karnataka for 10+ in IT.
Example: Underpaying EPF for an employee earning ₹1,00,000/month could result in:
Monthly Penalty=1%×₹12,000=₹1,200.
Risk 3: State-Specific Law Variations
Risk 4: Late Filings and Payments
- EPF/ESI: 12% annual interest on delayed payments.
- TDS: 1.5% monthly interest under Section 234A.
Example: A 3-month delay in ₹10 lakh EPF contributions incurs:
Interest=12%×₹10,00,000×(3/12)=₹30,000.

Risk 5: Poor Record-Keeping
- Impact: Failed audits may lead to penalties up to ₹25,000 under the Companies Act.
3. How Wisemonk Mitigates Compliance Risks
- Automated Payroll Systems:
- Real-time tracking of EPF/ESI thresholds and state-specific laws.
- Auto-generate Form 24Q and ECR filings.
- Multi-State Compliance:
- Centralized dashboard for Maharashtra’s leave policies vs. Karnataka’s ESI rules.
- Employee Classification:
- Algorithmic checks to distinguish contractors from full-time staff.
- Audit Support:
- Document retention and reconciliation services for labor inspections.
Case Study: A global tech firm reduced payroll errors by 60% using Wisemonk’s platform, avoiding ₹45 lakh in potential penalties.